Overview

There are five subcommands in sstar:

• score
• quantile
• threshold
• matchrate
• tract

To display help information for each subcommand, users can use

sstar subcommand -h

For example,

sstar score -h

Note: sstar assumes a variant is bi-allelic among reference, target, and source populations. Please check your data carefully before using sstar. In this manual, we define the population without introgressed fragments as the reference population, the population receiving introgressed fragments as the target population, and the population donating introgressed fragments as the source population. Besides, sstar assumes an individual is diploid.