infer

sstar2 infer --model examples/data/trained.model.onnx \
             --config examples/data/sstar2.config.yaml \
             --feat-file test.score.tsv \
             --pred-file test.pred.tsv \
             --tract-file test.inferred.tracts.bed

Settings

Argument	Description
--model	Path to the model file.
--config	Path to the config file.
--feat-file	Path to the feature TSV file.
--pred-file	Path to the prediction TSV file.
--tract-file	Path to the output BED file.
--match-bonus	Bonus for matching genotypes between two variants. Default: 5000.
--max-mismatch	Maximum genotype distance allowed before a pair is discarded. Default: 5.
--mismatch-penalty	Penalty for mismatching genotypes between two variants. Default: -10000.